# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN7_microglia_17.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN7_microglia_17.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  241.0  107.79  37.63
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  241.09  107.7  36.94
4.3  Radius of line 4 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  241.08  107.71  36.99
4.3  Radius of line 5 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  241.07  107.72  37.08
4.3  Radius of line 6 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  241.05  107.75  37.26
4.3  Radius of line 7 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  241.0  107.79  37.63
4.5  Radius of terminal line 2161 at 0.169 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  261.69  113.7  28.44
2.5  Seg length ending at pt. 3 <= 0.1 at 0.05.  (removed)
     A       X, Y, Z:  241.09  107.7  36.94
2.5  Seg length ending at pt. 5 <= 0.1 at 0.0911.  (removed)
     A       X, Y, Z:  241.07  107.72  37.08
2.4  Seg length ending at pt. 86 >= 6.0 stdevs above mean at 1.1055.  (no action taken)
     B1      X, Y, Z:  240.5  108.4  37.63
2.4  Seg length ending at pt. 590 >= 6.0 stdevs above mean at 1.1219.  (no action taken)
     B1      X, Y, Z:  241.59  107.4  36.04
2.4  Seg length ending at pt. 861 >= 6.0 stdevs above mean at 1.1058.  (no action taken)
     B1      X, Y, Z:  241.5  115.2  13.88
2.5  Seg length ending at pt. 929 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  240.3  115.8  22.55
2.4  Seg length ending at pt. 937 >= 6.0 stdevs above mean at 12.652.  (no action taken)
     B1      X, Y, Z:  240.3  115.79  22.01
2.4  Seg length ending at pt. 1176 >= 6.0 stdevs above mean at 1.1208.  (no action taken)
     B1      X, Y, Z:  248.4  96.73  33.79
2.4  Seg length ending at pt. 1513 >= 6.0 stdevs above mean at 1.4561.  (no action taken)
     B1      X, Y, Z:  241.4  106.9  37.43
2.4  Seg length ending at pt. 1643 >= 6.0 stdevs above mean at 1.1224.  (no action taken)
     B1      X, Y, Z:  255.5  106.0  39.21
2.4  Seg length ending at pt. 1811 >= 6.0 stdevs above mean at 1.1227.  (no action taken)
     B1      X, Y, Z:  260.39  103.0  37.03
2.6  Line 1 and line 7 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  241.0  107.79  37.63
4.4  Line 937 of rad 0.507 links to 928 of rad 0.15.  (no action taken)
     B1      X, Y, Z:  240.3  115.79  22.01
2.1  Line 2 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  241.09  107.7  36.89
2.1  Line 4 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  241.08  107.71  36.99
 
 


Number of type A irregularities = 3
Number of type B1 irregularities = 19
Number of type B2 irregularities = 0
Number of type C irregularities = 0
