# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN7_microglia_15.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN7_microglia_15.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  113.29  114.4  29.98
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  113.29  114.4  29.98
4.5  Radius of terminal line 643 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  113.29  114.4  29.98
4.5  Radius of terminal line 1164 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  113.29  114.4  29.98
4.5  Radius of terminal line 1408 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  113.29  114.4  29.98
2.5  Seg length ending at pt. 4 <= 0.1 at 0.0812.  (removed)
     A       X, Y, Z:  113.25  114.35  30.03
2.4  Seg length ending at pt. 150 >= 6.0 stdevs above mean at 1.1281.  (no action taken)
     B1      X, Y, Z:  103.59  118.4  45.15
2.4  Seg length ending at pt. 432 >= 6.0 stdevs above mean at 1.0657.  (no action taken)
     B1      X, Y, Z:  98.48  118.0  36.32
2.4  Seg length ending at pt. 627 >= 6.0 stdevs above mean at 1.1001.  (no action taken)
     B1      X, Y, Z:  103.9  119.4  27.73
2.4  Seg length ending at pt. 996 >= 6.0 stdevs above mean at 1.0695.  (no action taken)
     B1      X, Y, Z:  115.29  117.2  36.4
2.4  Seg length ending at pt. 1206 >= 6.0 stdevs above mean at 1.2708.  (no action taken)
     B1      X, Y, Z:  119.5  113.2  22.75
2.4  Seg length ending at pt. 1410 >= 6.0 stdevs above mean at 1.2596.  (no action taken)
     B1      X, Y, Z:  112.79  114.59  28.51
2.4  Seg length ending at pt. 2185 >= 6.0 stdevs above mean at 1.0824.  (no action taken)
     B1      X, Y, Z:  107.2  101.0  25.92
2.7  Line 643 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  113.29  114.4  29.98
2.7  Line 1164 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  113.29  114.4  29.98
2.7  Line 1408 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  113.29  114.4  29.98
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  113.29  114.4  29.98
2.1  Line 3 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  113.29  114.4  29.98
 
 


Number of type A irregularities = 4
Number of type B1 irregularities = 14
Number of type B2 irregularities = 0
Number of type C irregularities = 0
