# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN7_microglia_12.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN7_microglia_12.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  49.96  276.89  26.53
4.3  Radius of line 2 at 3.258 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  49.78  277.1  26.5
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  49.96  276.89  26.53
4.5  Radius of terminal line 168 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  49.96  276.89  26.53
2.4  Seg length ending at pt. 4 >= 6.0 stdevs above mean at 1.1138.  (no action taken)
     B1      X, Y, Z:  49.42  276.6  27.46
2.4  Seg length ending at pt. 145 >= 6.0 stdevs above mean at 1.14.  (no action taken)
     B1      X, Y, Z:  57.85  264.3  39.21
2.4  Seg length ending at pt. 168 >= 6.0 stdevs above mean at 1.1138.  (no action taken)
     B1      X, Y, Z:  49.96  276.89  26.53
2.4  Seg length ending at pt. 247 >= 6.0 stdevs above mean at 1.075.  (no action taken)
     B1      X, Y, Z:  49.77  280.89  25.76
2.5  Seg length ending at pt. 1742 <= 0.1 at 0.097.  (removed)
     A       X, Y, Z:  59.97  295.92  49.46
2.7  Line 168 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  49.96  276.89  26.53
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  49.96  276.89  26.53
2.1  Line 1741 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  59.94  295.94  49.37
 
 


Number of type A irregularities = 2
Number of type B1 irregularities = 10
Number of type B2 irregularities = 0
Number of type C irregularities = 0
