# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN6_microglia_2.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN6_microglia_2.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  201.9  107.79  33.42
4.3  Radius of line 2 at 3.062 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  201.69  108.2  33.72
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  201.9  107.79  33.42
4.3  Radius of line 4 at 2.998 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  202.0  108.0  33.1
4.3  Radius of line 5 at 2.998 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  202.09  108.2  32.78
4.5  Radius of terminal line 123 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  201.9  107.79  33.42
4.3  Radius of line 124 at 2.855 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  201.69  107.2  32.92
4.3  Radius of line 125 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  201.8  107.5  33.17
4.5  Radius of terminal line 126 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  201.9  107.79  33.42
4.3  Radius of line 1760 at 2.894 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  201.4  108.5  33.96
2.5  Seg length ending at pt. 680 <= 0.1 at 0.0748.  (removed)
     A       X, Y, Z:  202.15  98.45  28.21
2.4  Seg length ending at pt. 925 >= 6.0 stdevs above mean at 28.204.  (no action taken)
     B1      X, Y, Z:  202.19  98.5  27.75
2.4  Seg length ending at pt. 1495 >= 6.0 stdevs above mean at 1.1711.  (no action taken)
     B1      X, Y, Z:  193.3  89.2  32.36
2.4  Seg length ending at pt. 1897 >= 6.0 stdevs above mean at 1.1786.  (no action taken)
     B1      X, Y, Z:  203.09  117.2  37.34
2.4  Seg length ending at pt. 2307 >= 6.0 stdevs above mean at 1.1942.  (no action taken)
     B1      X, Y, Z:  209.5  126.0  16.73
2.7  Line 123 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  201.9  107.79  33.42
2.7  Line 126 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  201.9  107.79  33.42
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  201.9  107.79  33.42
2.6  Line 2173 and line 2180 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  213.5  118.0  25.35
4.4  Line 925 of rad 0.745 links to 679 of rad 0.15.  (no action taken)
     B1      X, Y, Z:  202.19  98.5  27.75
 
 


Number of type A irregularities = 3
Number of type B1 irregularities = 17
Number of type B2 irregularities = 0
Number of type C irregularities = 0
