# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN5_microglia_9.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN5_microglia_9.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  198.3  82.06  21.96
4.3  Radius of line 2 at 3.045 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  198.3  81.59  21.66
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  198.3  81.82  21.81
4.3  Radius of line 4 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  198.3  82.06  21.96
4.3  Radius of line 5 at 3.055 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  198.0  82.57  21.69
4.5  Radius of terminal line 218 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  198.3  82.06  21.96
2.4  Seg length ending at pt. 238 >= 6.0 stdevs above mean at 1.3307.  (no action taken)
     B1      X, Y, Z:  198.8  82.0  23.03
2.4  Seg length ending at pt. 263 >= 6.0 stdevs above mean at 1.1467.  (no action taken)
     B1      X, Y, Z:  198.8  83.01  28.26
2.5  Seg length ending at pt. 347 <= 0.1 at 0.0927.  (removed)
     A       X, Y, Z:  198.0  81.04  21.98
2.4  Seg length ending at pt. 1089 >= 6.0 stdevs above mean at 1.2259.  (no action taken)
     B1      X, Y, Z:  197.09  92.76  39.57
2.4  Seg length ending at pt. 1998 >= 6.0 stdevs above mean at 1.4065.  (no action taken)
     B1      X, Y, Z:  198.09  80.95  20.6
2.4  Seg length ending at pt. 2095 >= 6.0 stdevs above mean at 1.1676.  (no action taken)
     B1      X, Y, Z:  198.69  81.45  20.64
2.7  Line 218 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  198.3  82.06  21.96
2.6  Line 1 and line 4 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  198.3  82.06  21.96
 
 


Number of type A irregularities = 2
Number of type B1 irregularities = 12
Number of type B2 irregularities = 0
Number of type C irregularities = 0
