# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN5_microglia_30.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN5_microglia_30.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  252.09  173.19  42.5
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  252.09  173.14  42.67
4.3  Radius of line 4 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  252.09  173.19  42.5
4.5  Radius of terminal line 449 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  252.09  173.19  42.5
2.4  Seg length ending at pt. 168 >= 6.0 stdevs above mean at 1.13.  (no action taken)
     B1      X, Y, Z:  241.4  180.8  28.14
2.4  Seg length ending at pt. 1599 >= 6.0 stdevs above mean at 1.1473.  (no action taken)
     B1      X, Y, Z:  262.1  176.19  30.57
2.5  Seg length ending at pt. 2250 <= 0.1 at 0.0849.  (removed)
     A       X, Y, Z:  240.5  160.19  34.17
2.7  Line 449 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  252.09  173.19  42.5
2.6  Line 1 and line 4 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  252.09  173.19  42.5
2.6  Line 1325 and line 1334 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  258.39  162.8  31.53
 
 


Number of type A irregularities = 2
Number of type B1 irregularities = 8
Number of type B2 irregularities = 0
Number of type C irregularities = 0
