# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN5_microglia_15.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN5_microglia_15.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  266.8  268.39  33.92
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  266.85  268.14  33.85
4.3  Radius of line 4 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  266.8  268.39  33.92
4.3  Radius of line 6 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  266.5  268.29  33.95
4.5  Radius of terminal line 7 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  266.8  268.39  33.92
2.4  Seg length ending at pt. 57 >= 6.0 stdevs above mean at 1.0904.  (no action taken)
     B1      X, Y, Z:  265.39  278.6  36.36
2.4  Seg length ending at pt. 457 >= 6.0 stdevs above mean at 1.3093.  (no action taken)
     B1      X, Y, Z:  260.19  259.5  21.5
2.4  Seg length ending at pt. 612 >= 6.0 stdevs above mean at 1.0612.  (no action taken)
     B1      X, Y, Z:  257.8  268.0  5.88
2.4  Seg length ending at pt. 748 >= 6.0 stdevs above mean at 1.0288.  (no action taken)
     B1      X, Y, Z:  260.1  257.0  29.21
2.5  Seg length ending at pt. 827 <= 0.1 at 0.0787.  (removed)
     A       X, Y, Z:  255.42  250.02  27.99
2.4  Seg length ending at pt. 977 >= 6.0 stdevs above mean at 1.1325.  (no action taken)
     B1      X, Y, Z:  259.19  255.69  29.17
2.4  Seg length ending at pt. 1434 >= 6.0 stdevs above mean at 1.2041.  (no action taken)
     B1      X, Y, Z:  253.0  264.3  28.62
2.4  Seg length ending at pt. 1661 >= 6.0 stdevs above mean at 1.0308.  (no action taken)
     B1      X, Y, Z:  256.0  258.89  40.06
2.4  Seg length ending at pt. 1930 >= 6.0 stdevs above mean at 1.2855.  (no action taken)
     B1      X, Y, Z:  271.8  280.19  42.39
2.4  Seg length ending at pt. 3617 >= 6.0 stdevs above mean at 1.1834.  (no action taken)
     B1      X, Y, Z:  283.69  234.19  46.32
2.7  Line 7 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  266.8  268.39  33.92
2.6  Line 1 and line 4 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  266.8  268.39  33.92
2.1  Line 826 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  255.44  250.05  28.06
 
 


Number of type A irregularities = 2
Number of type B1 irregularities = 16
Number of type B2 irregularities = 0
Number of type C irregularities = 0
