# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN3_microglia_41.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN3_microglia_41.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  23.53  233.5  54.0
4.5  Radius of terminal line 1590 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  23.53  233.5  54.0
4.5  Radius of terminal line 1972 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  23.53  233.5  54.0
2.4  Seg length ending at pt. 735 >= 6.0 stdevs above mean at 1.0134.  (no action taken)
     B1      X, Y, Z:  36.28  229.09  46.96
2.4  Seg length ending at pt. 1597 >= 6.0 stdevs above mean at 1.1207.  (no action taken)
     B1      X, Y, Z:  22.03  235.0  49.63
2.4  Seg length ending at pt. 1744 >= 6.0 stdevs above mean at 1.0179.  (no action taken)
     B1      X, Y, Z:  19.64  236.69  45.82
2.4  Seg length ending at pt. 2102 >= 6.0 stdevs above mean at 1.0345.  (no action taken)
     B1      X, Y, Z:  12.22  217.59  45.96
2.4  Seg length ending at pt. 2265 >= 6.0 stdevs above mean at 1.0185.  (no action taken)
     B1      X, Y, Z:  7.06  233.9  36.92
2.5  Seg length ending at pt. 2393 <= 0.1 at 0.0954.  (removed)
     A       X, Y, Z:  1.62  251.09  55.39
2.5  Seg length ending at pt. 2395 <= 0.1 at 0.0224.  (removed)
     A       X, Y, Z:  1.65  251.19  55.4
2.7  Line 1590 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  23.53  233.5  54.0
2.7  Line 1972 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  23.53  233.5  54.0
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  23.53  233.5  54.0
 
 


Number of type A irregularities = 4
Number of type B1 irregularities = 9
Number of type B2 irregularities = 0
Number of type C irregularities = 0
