# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN3_microglia_34.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN3_microglia_34.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  160.4  268.5  16.28
4.3  Radius of line 2 at 3.165 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  159.9  268.89  16.37
4.3  Radius of line 3 at 3.069 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  159.5  269.1  16.33
4.3  Radius of line 4 at 3.007 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  159.3  269.39  16.23
4.3  Radius of line 5 at 2.955 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  159.19  269.6  16.14
4.3  Radius of line 6 at 2.907 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  159.09  269.89  16.08
4.3  Radius of line 1898 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  160.4  268.5  16.28
4.3  Radius of line 1899 at 3.217 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  160.5  268.19  16.39
4.5  Radius of terminal line 1900 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  160.4  268.5  16.28
4.3  Radius of line 1901 at 3.105 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  160.69  268.0  16.35
4.3  Radius of line 1919 at 3.011 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  161.0  267.89  16.19
4.3  Radius of line 1920 at 2.929 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  161.19  267.8  16.0
2.5  Seg length ending at pt. 346 <= 0.1 at 0.0995.  (removed)
     A       X, Y, Z:  146.25  279.65  12.22
2.4  Seg length ending at pt. 445 >= 6.0 stdevs above mean at 1.2281.  (no action taken)
     B1      X, Y, Z:  146.3  279.39  13.36
2.4  Seg length ending at pt. 1009 >= 6.0 stdevs above mean at 1.307.  (no action taken)
     B1      X, Y, Z:  150.3  284.89  40.36
2.4  Seg length ending at pt. 1892 >= 6.0 stdevs above mean at 1.1769.  (no action taken)
     B1      X, Y, Z:  153.59  258.39  38.2
2.5  Seg length ending at pt. 1898 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  160.4  268.5  16.28
2.4  Seg length ending at pt. 1902 >= 6.0 stdevs above mean at 1.1577.  (no action taken)
     B1      X, Y, Z:  160.3  268.0  17.44
2.5  Seg length ending at pt. 2475 <= 0.1 at 0.1.  (removed)
     A       X, Y, Z:  163.19  249.9  22.44
2.7  Line 1900 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  160.4  268.5  16.28
2.6  Line 288 and line 295 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  145.3  283.5  5.86
2.6  Line 1302 and line 1372 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  165.69  287.0  26.96
2.1  Line 345 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  146.3  279.6  12.15
 
 


Number of type A irregularities = 4
Number of type B1 irregularities = 19
Number of type B2 irregularities = 0
Number of type C irregularities = 0
