# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN3_microglia_30.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN3_microglia_30.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  237.19  263.39  31.5
4.3  Radius of line 2 at 3.089 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  237.59  262.89  31.42
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  237.39  263.14  31.46
4.3  Radius of line 4 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  237.19  263.39  31.5
4.3  Radius of line 7 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  237.39  263.6  31.03
4.5  Radius of terminal line 8 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  237.19  263.39  31.5
4.5  Radius of terminal line 1809 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  237.19  263.39  31.5
2.4  Seg length ending at pt. 9 >= 6.0 stdevs above mean at 1.6334.  (no action taken)
     B1      X, Y, Z:  237.8  264.1  29.53
2.5  Seg length ending at pt. 623 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  230.07  273.82  14.58
2.4  Seg length ending at pt. 719 >= 6.0 stdevs above mean at 1.1136.  (no action taken)
     B1      X, Y, Z:  235.0  279.39  21.14
2.4  Seg length ending at pt. 1178 >= 6.0 stdevs above mean at 1.5021.  (no action taken)
     B1      X, Y, Z:  237.0  262.8  32.24
2.4  Seg length ending at pt. 1181 >= 6.0 stdevs above mean at 1.1183.  (no action taken)
     B1      X, Y, Z:  236.9  262.1  34.22
2.4  Seg length ending at pt. 1183 >= 6.0 stdevs above mean at 1.1699.  (no action taken)
     B1      X, Y, Z:  237.09  262.19  36.18
2.5  Seg length ending at pt. 1580 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  233.4  252.59  36.89
2.4  Seg length ending at pt. 2812 >= 6.0 stdevs above mean at 1.2131.  (no action taken)
     B1      X, Y, Z:  240.4  258.8  12.69
2.7  Line 8 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  237.19  263.39  31.5
2.7  Line 1809 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  237.19  263.39  31.5
2.6  Line 1 and line 4 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  237.19  263.39  31.5
2.6  Line 5 and line 7 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  237.39  263.6  31.03
2.1  Line 622 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  230.15  273.85  14.63
 
 


Number of type A irregularities = 4
Number of type B1 irregularities = 16
Number of type B2 irregularities = 0
Number of type C irregularities = 0
