# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN3_microglia_23.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN3_microglia_23.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  224.4  139.8  41.95
4.5  Radius of terminal line 7 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  224.4  139.8  41.95
4.5  Radius of terminal line 803 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  224.4  139.8  41.95
4.5  Radius of terminal line 915 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  224.4  139.8  41.95
2.5  Seg length ending at pt. 4 <= 0.1 at 0.086.  (removed)
     A       X, Y, Z:  224.47  139.77  41.99
2.5  Seg length ending at pt. 6 <= 0.1 at 0.0964.  (removed)
     A       X, Y, Z:  224.47  139.77  41.99
2.4  Seg length ending at pt. 557 >= 6.0 stdevs above mean at 1.0946.  (no action taken)
     B1      X, Y, Z:  231.09  139.19  26.51
2.4  Seg length ending at pt. 696 >= 6.0 stdevs above mean at 1.1288.  (no action taken)
     B1      X, Y, Z:  237.0  134.8  13.68
2.4  Seg length ending at pt. 1363 >= 6.0 stdevs above mean at 1.1609.  (no action taken)
     B1      X, Y, Z:  210.19  146.69  31.67
2.5  Seg length ending at pt. 1700 <= 0.1 at 0.06.  (removed)
     A       X, Y, Z:  215.3  159.8  31.0
2.7  Line 7 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  224.4  139.8  41.95
2.7  Line 803 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  224.4  139.8  41.95
2.7  Line 915 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  224.4  139.8  41.95
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  224.4  139.8  41.95
2.6  Line 561 and line 580 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  230.4  139.59  23.62
2.1  Line 3 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  224.4  139.8  41.95
 
 


Number of type A irregularities = 6
Number of type B1 irregularities = 10
Number of type B2 irregularities = 0
Number of type C irregularities = 0
