# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN2_microglia_15.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN2_microglia_15.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  115.79  177.19  19.25
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  116.08  176.91  19.58
4.3  Radius of line 4 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  116.06  176.93  19.56
4.3  Radius of line 5 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  116.02  176.97  19.51
4.3  Radius of line 6 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  115.94  177.05  19.42
4.3  Radius of line 7 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  115.79  177.19  19.25
4.5  Radius of terminal line 1643 at 0.258 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  109.79  171.09  29.39
2.5  Seg length ending at pt. 3 <= 0.1 at 0.0245.  (removed)
     A       X, Y, Z:  116.08  176.91  19.58
2.5  Seg length ending at pt. 5 <= 0.1 at 0.0755.  (removed)
     A       X, Y, Z:  116.02  176.97  19.51
2.4  Seg length ending at pt. 55 >= 6.0 stdevs above mean at 1.2602.  (no action taken)
     B1      X, Y, Z:  116.29  177.09  18.21
2.4  Seg length ending at pt. 72 >= 6.0 stdevs above mean at 1.2034.  (no action taken)
     B1      X, Y, Z:  116.09  176.4  18.48
2.5  Seg length ending at pt. 416 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  124.82  177.12  16.88
2.5  Seg length ending at pt. 862 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  109.7  172.0  32.6
2.4  Seg length ending at pt. 1348 >= 6.0 stdevs above mean at 1.1691.  (no action taken)
     B1      X, Y, Z:  110.5  172.69  41.21
2.5  Seg length ending at pt. 4 <= 0.1 at 0.0583.  (removed)
     A       X, Y, Z:  116.06  176.93  19.56
2.6  Line 1 and line 7 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  115.79  177.19  19.25
2.1  Line 2 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  116.09  176.9  19.6
2.1  Line 415 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  124.75  177.14  16.82
 
 


Number of type A irregularities = 5
Number of type B1 irregularities = 13
Number of type B2 irregularities = 0
Number of type C irregularities = 0
