# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN1_microglia_23.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN1_microglia_23.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  35.96  274.1  46.0
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  35.96  274.1  46.0
4.3  Radius of line 7 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  36.21  274.2  45.93
4.5  Radius of terminal line 8 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  35.96  274.1  46.0
4.3  Radius of line 1026 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  36.01  273.75  45.62
4.5  Radius of terminal line 1027 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  35.96  274.1  46.0
4.5  Radius of terminal line 2279 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  35.96  274.1  46.0
2.4  Seg length ending at pt. 2 >= 6.0 stdevs above mean at 1.2561.  (no action taken)
     B1      X, Y, Z:  35.95  274.3  47.24
2.4  Seg length ending at pt. 3 >= 6.0 stdevs above mean at 1.2561.  (no action taken)
     B1      X, Y, Z:  35.96  274.1  46.0
2.4  Seg length ending at pt. 1025 >= 6.0 stdevs above mean at 1.0732.  (no action taken)
     B1      X, Y, Z:  36.07  273.39  45.24
2.4  Seg length ending at pt. 1500 >= 6.0 stdevs above mean at 1.088.  (no action taken)
     B1      X, Y, Z:  20.28  260.69  44.03
2.4  Seg length ending at pt. 2227 >= 6.0 stdevs above mean at 1.511.  (no action taken)
     B1      X, Y, Z:  35.53  273.69  47.29
2.4  Seg length ending at pt. 2279 >= 6.0 stdevs above mean at 1.4202.  (no action taken)
     B1      X, Y, Z:  35.96  274.1  46.0
2.4  Seg length ending at pt. 2280 >= 6.0 stdevs above mean at 1.858.  (no action taken)
     B1      X, Y, Z:  35.6  274.0  47.82
2.4  Seg length ending at pt. 2281 >= 6.0 stdevs above mean at 1.0747.  (no action taken)
     B1      X, Y, Z:  35.31  274.1  48.85
2.7  Line 8 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  35.96  274.1  46.0
2.7  Line 1027 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  35.96  274.1  46.0
2.7  Line 2279 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  35.96  274.1  46.0
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  35.96  274.1  46.0
2.6  Line 5 and line 7 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  36.21  274.2  45.93
 
 


Number of type A irregularities = 3
Number of type B1 irregularities = 17
Number of type B2 irregularities = 0
Number of type C irregularities = 0
