# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN1_microglia_16.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN1_microglia_16.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  273.8  128.69  42.81
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  274.05  128.64  42.53
4.3  Radius of line 4 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  273.8  128.69  42.81
4.5  Radius of terminal line 704 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  273.8  128.69  42.81
4.5  Radius of terminal line 748 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  273.8  128.69  42.81
2.4  Seg length ending at pt. 705 >= 6.0 stdevs above mean at 1.2044.  (no action taken)
     B1      X, Y, Z:  273.69  128.5  44.0
2.4  Seg length ending at pt. 748 >= 6.0 stdevs above mean at 1.2101.  (no action taken)
     B1      X, Y, Z:  273.8  128.69  42.81
2.4  Seg length ending at pt. 749 >= 6.0 stdevs above mean at 1.2937.  (no action taken)
     B1      X, Y, Z:  273.39  129.09  43.97
2.4  Seg length ending at pt. 2304 >= 6.0 stdevs above mean at 1.1942.  (no action taken)
     B1      X, Y, Z:  281.0  136.0  6.77
2.5  Seg length ending at pt. 2323 <= 0.1 at 0.0837.  (removed)
     A       X, Y, Z:  281.1  133.5  28.21
2.7  Line 704 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  273.8  128.69  42.81
2.7  Line 748 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  273.8  128.69  42.81
2.6  Line 1 and line 4 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  273.8  128.69  42.81
 
 


Number of type A irregularities = 3
Number of type B1 irregularities = 10
Number of type B2 irregularities = 0
Number of type C irregularities = 0
