# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN14_microglia_43.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN14_microglia_43.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  73.79  160.9  30.5
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  73.79  160.9  30.5
4.3  Radius of line 5 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  73.84  161.15  30.29
4.5  Radius of terminal line 6 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  73.79  160.9  30.5
2.4  Seg length ending at pt. 7 >= 6.0 stdevs above mean at 1.5138.  (no action taken)
     B1      X, Y, Z:  74.04  161.69  31.69
2.4  Seg length ending at pt. 8 >= 6.0 stdevs above mean at 1.0374.  (no action taken)
     B1      X, Y, Z:  74.18  162.0  32.67
2.5  Seg length ending at pt. 182 <= 0.1 at 0.05.  (removed)
     A       X, Y, Z:  81.1  167.34  45.98
2.4  Seg length ending at pt. 191 >= 6.0 stdevs above mean at 4.2554.  (no action taken)
     B1      X, Y, Z:  80.96  167.19  45.96
2.5  Seg length ending at pt. 779 <= 0.1 at 0.0671.  (removed)
     A       X, Y, Z:  72.62  165.1  26.17
2.4  Seg length ending at pt. 866 >= 6.0 stdevs above mean at 19.2114.  (no action taken)
     B1      X, Y, Z:  72.54  165.3  25.98
2.7  Line 6 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  73.79  160.9  30.5
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  73.79  160.9  30.5
4.4  Line 191 of rad 0.305 links to 181 of rad 0.15.  (no action taken)
     B1      X, Y, Z:  80.96  167.19  45.96
4.4  Line 866 of rad 1.225 links to 778 of rad 0.15.  (no action taken)
     B1      X, Y, Z:  72.54  165.3  25.98
 
 


Number of type A irregularities = 3
Number of type B1 irregularities = 11
Number of type B2 irregularities = 0
Number of type C irregularities = 0
