# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN14_microglia_35.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN14_microglia_35.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  124.79  94.34  18.5
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  124.69  94.09  18.57
4.3  Radius of line 4 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  124.79  94.34  18.5
4.5  Radius of terminal line 1512 at 0.219 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  123.9  95.17  30.26
2.4  Seg length ending at pt. 5 >= 6.0 stdevs above mean at 1.9267.  (no action taken)
     B1      X, Y, Z:  124.4  94.5  16.62
2.5  Seg length ending at pt. 44 <= 0.1 at 0.07.  (removed)
     A       X, Y, Z:  124.4  94.49  16.76
2.4  Seg length ending at pt. 178 >= 6.0 stdevs above mean at 1.5098.  (no action taken)
     B1      X, Y, Z:  124.59  94.79  14.51
2.5  Seg length ending at pt. 397 <= 0.1 at 0.0374.  (removed)
     A       X, Y, Z:  130.32  90.21  6.98
2.5  Seg length ending at pt. 399 <= 0.1 at 0.0787.  (removed)
     A       X, Y, Z:  130.4  90.12  6.99
2.4  Seg length ending at pt. 801 >= 6.0 stdevs above mean at 1.4158.  (no action taken)
     B1      X, Y, Z:  123.79  94.9  14.66
2.5  Seg length ending at pt. 1189 <= 0.1 at 0.0877.  (removed)
     A       X, Y, Z:  123.9  91.81  30.5
2.5  Seg length ending at pt. 398 <= 0.1 at 0.0787.  (removed)
     A       X, Y, Z:  130.35  90.18  6.98
2.6  Line 1 and line 4 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  124.79  94.34  18.5
2.1  Line 43 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  124.4  94.49  16.69
2.1  Line 396 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  130.3  90.24  6.97
 
 


Number of type A irregularities = 5
Number of type B1 irregularities = 10
Number of type B2 irregularities = 0
Number of type C irregularities = 0
