# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN14_microglia_16.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN14_microglia_16.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  186.4  220.59  37.5
4.3  Radius of line 2 at 3.207 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  186.4  220.09  37.35
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  186.4  220.59  37.5
4.3  Radius of line 4 at 2.908 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  186.8  221.19  37.64
4.5  Radius of terminal line 166 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  186.4  220.59  37.5
4.3  Radius of line 167 at 2.834 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  185.9  220.8  37.18
4.3  Radius of line 365 at 3.106 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  186.4  219.69  37.27
4.3  Radius of line 366 at 3.039 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  186.5  219.4  37.22
4.3  Radius of line 475 at 2.983 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  186.69  219.19  37.21
4.3  Radius of line 476 at 2.934 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  186.9  218.9  37.18
4.3  Radius of line 477 at 2.889 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  187.09  218.69  37.13
4.3  Radius of line 478 at 2.847 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  187.19  218.4  37.06
4.3  Radius of line 479 at 2.808 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  187.19  218.09  37.0
4.3  Radius of line 480 at 2.771 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  187.19  217.8  36.99
4.3  Radius of line 481 at 2.735 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  187.3  217.5  36.99
2.4  Seg length ending at pt. 1249 >= 6.0 stdevs above mean at 1.1323.  (no action taken)
     B1      X, Y, Z:  167.3  212.09  33.6
2.4  Seg length ending at pt. 2074 >= 6.0 stdevs above mean at 1.1459.  (no action taken)
     B1      X, Y, Z:  152.59  197.0  38.84
2.4  Seg length ending at pt. 2532 >= 6.0 stdevs above mean at 1.2698.  (no action taken)
     B1      X, Y, Z:  154.5  199.19  28.64
2.4  Seg length ending at pt. 2890 >= 6.0 stdevs above mean at 1.2626.  (no action taken)
     B1      X, Y, Z:  167.09  220.9  19.73
2.7  Line 166 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  186.4  220.59  37.5
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  186.4  220.59  37.5
 
 


Number of type A irregularities = 1
Number of type B1 irregularities = 20
Number of type B2 irregularities = 0
Number of type C irregularities = 0
