# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN14_microglia_14.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN14_microglia_14.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  66.42  273.89  24.5
4.3  Radius of line 2 at 3.178 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  66.45  273.39  24.53
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  66.42  273.89  24.5
4.5  Radius of terminal line 109 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  66.42  273.89  24.5
4.3  Radius of line 155 at 3.045 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  66.51  273.0  24.62
4.3  Radius of line 156 at 2.942 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  66.54  272.6  24.82
2.4  Seg length ending at pt. 184 >= 6.0 stdevs above mean at 1.0888.  (no action taken)
     B1      X, Y, Z:  59.7  271.8  29.1
2.4  Seg length ending at pt. 312 >= 6.0 stdevs above mean at 1.3347.  (no action taken)
     B1      X, Y, Z:  56.72  277.5  17.67
2.4  Seg length ending at pt. 340 >= 6.0 stdevs above mean at 1.0837.  (no action taken)
     B1      X, Y, Z:  56.03  280.19  12.72
2.4  Seg length ending at pt. 1097 >= 6.0 stdevs above mean at 1.2238.  (no action taken)
     B1      X, Y, Z:  51.45  278.19  37.24
2.4  Seg length ending at pt. 1187 >= 6.0 stdevs above mean at 1.1407.  (no action taken)
     B1      X, Y, Z:  60.35  279.89  42.21
2.4  Seg length ending at pt. 1388 >= 6.0 stdevs above mean at 1.2175.  (no action taken)
     B1      X, Y, Z:  66.2  268.0  37.32
2.4  Seg length ending at pt. 2326 >= 6.0 stdevs above mean at 1.2061.  (no action taken)
     B1      X, Y, Z:  83.18  272.8  38.34
2.7  Line 109 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  66.42  273.89  24.5
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  66.42  273.89  24.5
 
 


Number of type A irregularities = 1
Number of type B1 irregularities = 14
Number of type B2 irregularities = 0
Number of type C irregularities = 0
