# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN13_microglia_42.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN13_microglia_42.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  208.4  89.73  47.5
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  208.4  89.73  47.5
4.3  Radius of line 4 at 3.082 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  208.4  90.2  46.63
4.3  Radius of line 5 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  208.4  89.96  47.06
4.5  Radius of terminal line 6 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  208.4  89.73  47.5
4.3  Radius of line 2800 at 3.138 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  208.8  89.75  47.17
4.3  Radius of line 2801 at 3.013 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  209.09  89.7  46.92
2.4  Seg length ending at pt. 907 >= 6.0 stdevs above mean at 1.2685.  (no action taken)
     B1      X, Y, Z:  190.9  106.9  28.73
2.5  Seg length ending at pt. 2855 <= 0.1 at 0.0755.  (removed)
     A       X, Y, Z:  213.12  80.96  47.93
2.7  Line 6 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  208.4  89.73  47.5
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  208.4  89.73  47.5
2.1  Line 2854 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  213.05  80.98  47.95
 
 


Number of type A irregularities = 2
Number of type B1 irregularities = 10
Number of type B2 irregularities = 0
Number of type C irregularities = 0
