# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN13_microglia_34.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN13_microglia_34.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  193.5  246.3  19.85
4.3  Radius of line 2 at 3.121 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  193.19  245.9  19.42
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  193.5  246.3  19.85
4.3  Radius of line 4 at 2.944 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  194.09  246.59  19.35
4.3  Radius of line 5 at 2.801 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  194.3  247.0  19.14
4.3  Radius of line 6 at 2.696 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  194.19  247.4  19.05
4.3  Radius of line 7 at 2.605 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  194.19  247.8  18.89
4.3  Radius of line 234 at 3.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  192.8  245.59  19.33
4.3  Radius of line 235 at 2.909 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  192.5  245.4  19.55
4.3  Radius of line 236 at 2.826 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  192.4  245.19  19.92
4.3  Radius of line 237 at 2.744 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  192.5  244.9  20.37
4.3  Radius of line 238 at 2.667 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  192.59  244.69  20.85
4.3  Radius of line 239 at 2.597 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  192.69  244.5  21.32
4.5  Radius of terminal line 3031 at 0.158 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  207.8  252.3  25.98
2.4  Seg length ending at pt. 209 >= 6.0 stdevs above mean at 1.2232.  (no action taken)
     B1      X, Y, Z:  190.19  265.1  12.33
2.4  Seg length ending at pt. 593 >= 6.0 stdevs above mean at 1.1949.  (no action taken)
     B1      X, Y, Z:  187.69  244.09  46.14
2.5  Seg length ending at pt. 2268 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  209.8  243.4  18.21
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  193.5  246.3  19.85
2.1  Line 2267 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  209.8  243.35  18.25
 
 


Number of type A irregularities = 1
Number of type B1 irregularities = 18
Number of type B2 irregularities = 0
Number of type C irregularities = 0
