# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN13_microglia_30.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN13_microglia_30.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  84.71  262.39  22.5
4.3  Radius of line 2 at 3.143 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  84.46  262.0  22.25
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  84.71  262.39  22.5
4.5  Radius of terminal line 225 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  84.71  262.39  22.5
4.3  Radius of line 458 at 3.01 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  84.25  261.69  21.94
2.5  Seg length ending at pt. 306 <= 0.1 at 0.0469.  (removed)
     A       X, Y, Z:  93.68  261.97  22.55
2.5  Seg length ending at pt. 308 <= 0.1 at 0.0911.  (removed)
     A       X, Y, Z:  93.78  261.89  22.6
2.4  Seg length ending at pt. 893 >= 6.0 stdevs above mean at 1.2678.  (no action taken)
     B1      X, Y, Z:  85.25  260.6  13.72
2.5  Seg length ending at pt. 1126 <= 0.1 at 0.0707.  (removed)
     A       X, Y, Z:  88.68  250.32  19.23
2.4  Seg length ending at pt. 1196 >= 6.0 stdevs above mean at 1.2554.  (no action taken)
     B1      X, Y, Z:  91.84  244.5  25.3
2.5  Seg length ending at pt. 1810 <= 0.1 at 0.0927.  (removed)
     A       X, Y, Z:  94.89  250.69  45.04
2.5  Seg length ending at pt. 307 <= 0.1 at 0.0938.  (removed)
     A       X, Y, Z:  93.71  261.94  22.57
2.7  Line 225 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  84.71  262.39  22.5
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  84.71  262.39  22.5
2.1  Line 305 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  93.65  262.0  22.53
2.1  Line 1125 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  88.64  250.35  19.28
2.1  Line 1809 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  94.83  250.64  44.99
 
 


Number of type A irregularities = 6
Number of type B1 irregularities = 11
Number of type B2 irregularities = 0
Number of type C irregularities = 0
