# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN13_microglia_15.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN13_microglia_15.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  115.2  254.5  37.32
4.3  Radius of line 2 at 3.082 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  115.4  254.9  37.11
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  115.2  254.5  37.32
4.3  Radius of line 4 at 3.147 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  115.09  254.75  37.21
4.3  Radius of line 5 at 3.147 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  115.0  255.0  37.09
4.3  Radius of line 6 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  115.09  254.75  37.21
4.5  Radius of terminal line 7 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  115.2  254.5  37.32
4.3  Radius of line 190 at 3.047 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  115.09  255.4  36.82
4.5  Radius of terminal line 2182 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  115.2  254.5  37.32
2.4  Seg length ending at pt. 1051 >= 6.0 stdevs above mean at 1.0355.  (no action taken)
     B1      X, Y, Z:  114.0  264.89  33.77
2.4  Seg length ending at pt. 1396 >= 6.0 stdevs above mean at 1.2733.  (no action taken)
     B1      X, Y, Z:  115.0  254.19  38.35
2.4  Seg length ending at pt. 1862 >= 6.0 stdevs above mean at 1.1578.  (no action taken)
     B1      X, Y, Z:  117.79  242.3  41.85
2.5  Seg length ending at pt. 2121 <= 0.1 at 0.0714.  (removed)
     A       X, Y, Z:  115.64  239.85  38.86
2.4  Seg length ending at pt. 2182 >= 6.0 stdevs above mean at 1.0941.  (no action taken)
     B1      X, Y, Z:  115.2  254.5  37.32
2.4  Seg length ending at pt. 2183 >= 6.0 stdevs above mean at 1.5609.  (no action taken)
     B1      X, Y, Z:  114.9  254.69  38.84
2.4  Seg length ending at pt. 2184 >= 6.0 stdevs above mean at 1.0659.  (no action taken)
     B1      X, Y, Z:  114.7  255.0  39.84
2.7  Line 7 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  115.2  254.5  37.32
2.7  Line 2182 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  115.2  254.5  37.32
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  115.2  254.5  37.32
2.6  Line 4 and line 6 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  115.09  254.75  37.21
2.6  Line 59 and line 68 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  108.4  252.59  36.92
2.1  Line 2120 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  115.69  239.9  38.85
 
 


Number of type A irregularities = 3
Number of type B1 irregularities = 19
Number of type B2 irregularities = 0
Number of type C irregularities = 0
