# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN11_microglia_9.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN11_microglia_9.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  174.09  182.09  16.71
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  173.81  182.28  16.51
4.3  Radius of line 4 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  173.83  182.27  16.52
4.3  Radius of line 5 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  173.87  182.25  16.55
4.3  Radius of line 6 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  173.94  182.19  16.6
4.3  Radius of line 7 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  174.09  182.09  16.71
4.5  Radius of terminal line 433 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  174.09  182.09  16.71
2.5  Seg length ending at pt. 3 <= 0.1 at 0.0245.  (removed)
     A       X, Y, Z:  173.81  182.28  16.51
2.5  Seg length ending at pt. 5 <= 0.1 at 0.0539.  (removed)
     A       X, Y, Z:  173.87  182.25  16.55
2.4  Seg length ending at pt. 434 >= 6.0 stdevs above mean at 1.2616.  (no action taken)
     B1      X, Y, Z:  174.3  182.19  15.47
2.4  Seg length ending at pt. 506 >= 6.0 stdevs above mean at 1.1609.  (no action taken)
     B1      X, Y, Z:  173.9  182.69  15.44
2.4  Seg length ending at pt. 1102 >= 6.0 stdevs above mean at 1.1537.  (no action taken)
     B1      X, Y, Z:  163.69  186.4  28.25
2.4  Seg length ending at pt. 1362 >= 6.0 stdevs above mean at 1.265.  (no action taken)
     B1      X, Y, Z:  151.3  175.8  40.28
2.5  Seg length ending at pt. 4 <= 0.1 at 0.0469.  (removed)
     A       X, Y, Z:  173.83  182.27  16.52
2.7  Line 433 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  174.09  182.09  16.71
2.6  Line 1 and line 7 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  174.09  182.09  16.71
2.1  Line 2 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  173.8  182.3  16.5
 
 


Number of type A irregularities = 4
Number of type B1 irregularities = 13
Number of type B2 irregularities = 0
Number of type C irregularities = 0
