# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN11_microglia_30.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN11_microglia_30.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  116.09  94.87  36.6
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  116.09  94.87  36.6
4.3  Radius of line 6 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  116.22  94.79  36.44
4.5  Radius of terminal line 7 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  116.09  94.87  36.6
4.5  Radius of terminal line 961 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  116.09  94.87  36.6
4.3  Radius of line 963 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  115.75  94.67  36.02
4.5  Radius of terminal line 964 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  116.09  94.87  36.6
2.4  Seg length ending at pt. 962 >= 6.0 stdevs above mean at 1.3272.  (no action taken)
     B1      X, Y, Z:  115.4  94.46  35.45
2.5  Seg length ending at pt. 2061 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  112.42  83.42  24.22
2.5  Seg length ending at pt. 2507 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  109.79  105.29  32.85
2.7  Line 7 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  116.09  94.87  36.6
2.7  Line 961 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  116.09  94.87  36.6
2.7  Line 964 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  116.09  94.87  36.6
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  116.09  94.87  36.6
2.6  Line 4 and line 6 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  116.22  94.79  36.44
2.6  Line 1032 and line 1040 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  111.79  88.7  42.42
2.1  Line 2060 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  112.45  83.48  24.28
 
 


Number of type A irregularities = 5
Number of type B1 irregularities = 12
Number of type B2 irregularities = 0
Number of type C irregularities = 0
