# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN11_microglia_17.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN11_microglia_17.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  202.5  82.25  25.83
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  202.5  82.25  25.83
4.5  Radius of terminal line 759 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  202.5  82.25  25.83
4.5  Radius of terminal line 1039 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  202.5  82.25  25.83
2.5  Seg length ending at pt. 30 <= 0.1 at 0.0424.  (removed)
     A       X, Y, Z:  195.61  81.11  24.93
2.5  Seg length ending at pt. 32 <= 0.1 at 0.0755.  (removed)
     A       X, Y, Z:  195.5  81.15  24.96
2.4  Seg length ending at pt. 709 >= 6.0 stdevs above mean at 1.1775.  (no action taken)
     B1      X, Y, Z:  201.19  82.45  18.6
2.4  Seg length ending at pt. 1809 >= 6.0 stdevs above mean at 1.333.  (no action taken)
     B1      X, Y, Z:  219.3  94.0  13.66
2.4  Seg length ending at pt. 1826 >= 6.0 stdevs above mean at 1.4313.  (no action taken)
     B1      X, Y, Z:  221.8  93.95  10.58
2.5  Seg length ending at pt. 1946 <= 0.1 at 0.051.  (removed)
     A       X, Y, Z:  216.69  79.6  25.39
2.4  Seg length ending at pt. 2036 >= 6.0 stdevs above mean at 1.1564.  (no action taken)
     B1      X, Y, Z:  214.09  75.56  42.06
2.5  Seg length ending at pt. 31 <= 0.1 at 0.0877.  (removed)
     A       X, Y, Z:  195.57  81.13  24.94
2.7  Line 759 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  202.5  82.25  25.83
2.7  Line 1039 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  202.5  82.25  25.83
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  202.5  82.25  25.83
2.1  Line 29 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  195.65  81.1  24.92
2.1  Line 1945 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  216.69  79.61  25.44
 
 


Number of type A irregularities = 6
Number of type B1 irregularities = 11
Number of type B2 irregularities = 0
Number of type C irregularities = 0
